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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
MIT License
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AGAT - Add new feature (functional annotation) #1377

Closed rlibouba closed 7 months ago

rlibouba commented 8 months ago

Hello, I've opened this PR to add the function annotation to this tool. I'm having a problem defining filters for the outputs of this new function. Two output files are generated: report.txt and error.txt The user can add a blast output with the database to complete the functionality. By doing so, another output is generated: duplicatedNameFromBlast.txt You can also do the same thing by adding an interpro output where 5 other outputs will be generated. The user can use the blast and interpro outputs simultaneously or separately.

Even when there is no blast or interpro output. Can you help me?

bgruening commented 7 months ago

@rlibouba only two errors left.

One is this here:

@@ -0,0 +1,3 @@ +ERROR AP010953.1 not found among the db! You probably didn't give to me the same fasta file than the one used for the blast. (l2=nz_cp027599.1) +We have 1 description candidates. +error nothing found for AP010953.1-nz_cp027599.1

bgruening commented 7 months ago

Thanks a lot @rlibouba!

bgruening commented 7 months ago

Will be updated automatically over the weekend.