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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
MIT License
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Add RNAformer version 1.0.0 #1425

Open ivelet opened 1 month ago

bgruening commented 1 month ago

Please add a .shed.yml file, so that the tests are triggered.

bgruening commented 1 month ago

Tests are failing, please let me know if you need help.

ivelet commented 1 month ago

Tests are failing, please let me know if you need help.

Thank you. The tests all passed locally but it may be due to it using the outdated rnaformer==1.1.0 conda package. I have added a PR to upgrade the packages for rnaformer==1.3.2 which might fix this and also simplify the requirements for the tool: https://github.com/conda-forge/rnaformer-feedstock/pull/2. I will change the requirements and try again once the PR is merged.

bgruening commented 2 weeks ago

Is it a draft? Or ready for review? :-)

Thanks @ivelet

ivelet commented 2 weeks ago

Is it a draft? Or ready for review? :-)

Thanks @ivelet

It is a draft as it requires the new version of the RNAformer conda package which is still pending review:

https://github.com/conda-forge/rnaformer-feedstock/pull/3