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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
MIT License
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DotKnot #222

Closed smithcr closed 9 years ago

smithcr commented 9 years ago

DotKnot is a heuristic method for pseudoknot prediction in a given RNA sequence.

DotKnot extracts stem regions from the secondary structure probability dot plot calculated by RNAfold. Recursive H-type pseudoknots and intramolecular kissing hairpins are constructed and their presence in the sequence is verified.

http://dotknot.csse.uwa.edu.au/

AGoepfert commented 9 years ago

I am working on that tool

AGoepfert commented 9 years ago

done