Multi-sequence support for RNA snp tools

bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers

MIT License

116 stars 232 forks source link

Multi-sequence support for RNA snp tools #510

Open mmiladi opened 7 years ago

mmiladi commented 7 years ago

Hi @zwanli , Considering issue https://github.com/bgruening/galaxytools/issues/507 , we can think of extending RNAsnp and remuRNA wrappers to support multi sequences and snp-tags, e.g. support two types of input file fasta and tabular. With fasta type it can performs as current version, but with tabular the wrapper should split rows and run tool multiple times once per row. Tabular format could have this format for example:

Id       Sequence     Tag
Id1      GCCUGU      C2U
Id2      AGGUUCCA   G3U

mmiladi commented 7 years ago

What do you think @TorHou ?

TorHou commented 7 years ago

I think it should be done. Probably I will do it.