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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
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Images batch data generator for keras batch models tool available ? #948

Open yvanlebras opened 4 years ago

yvanlebras commented 4 years ago

Is there a way to use keras_batch_models tool https://github.com/bgruening/galaxytools/blob/master/tools/sklearn/keras_batch_models.xml on image ? In the ml usegalaxy.eu instance, there is a sentence saying, about this tool, "Build Deep learning Batch Training Models with online data generator for Genomic/Protein sequences and images" but I don't think we can apply it to images as there is no "Imagebatchgenerator" on the "Select a batch data generator" parameter.

bgruening commented 4 years ago

Jupp, this is only available in a PR for now ... how urgent is it?

yvanlebras commented 4 years ago

Thank you for your rapid answer. This is not urgent. Just I want to test it on pictures (thousands by algae species) I centralized on eu to test it when possible to use it as a showcase if relevant. If this is on a PR, this is alreday cool ;)

qiagu commented 4 years ago

https://github.com/bgruening/galaxytools/blob/master/tools/sklearn/keras_batch_models.xml#L41 By choosing this option, the batch model tool can output a batch model to be used in the image deep learning tool. Trying the image deep learning tool is very welcome. I have no time to do any production level test yet.

yvanlebras commented 4 years ago

Thank you @qiagu . Exactly what I was supposing. So I can use this strangely named option ;) to test it. Cool! Will go back to you when tests start. Have a nice week-end you two