import::read_proteingroups - TMT: preprocessing to convert reporter ion mass to index notation

bhagwataditya / autonomics0

Make omics analysis flow :-)

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Open r-cheologist opened 4 years ago

r-cheologist commented 4 years ago

Example: RAW_FILE.Cond1(126).Cond2(127)..R1 --> RAW_FILE.Cond1(1).Cond2(2)..R1

Attention! Check against mqpar.xml --> Question: is the MQ-inherent index of quant ions ordered by mass or parameter order?

Attention! Must be extendable to phopho as well!

r-cheologist commented 4 years ago

Exploring the MQ index question by running an anlysis on a raw file twice - identical but for the order of the TMT labels configured ...

r-cheologist commented 4 years ago

Experimentation seems to indicate, that MQ will order the labels by mass.