bharurn / mimicpy

Python based tools for preparing MiMiC QM/MM simulations
GNU General Public License v3.0
1 stars 0 forks source link

Expanding MPT for GRO selection too slow #13

Closed bharurn closed 4 years ago

bharurn commented 4 years ago

Currently for the default selector, the MPT file is expanded into fully for all molecules by multiplying each molecule dataframe by the number of molecules. This takes too long for large no. of molecules like water (even on localhost).

So, the algorithm for multiplying the dataframe has to be changed. Or the MPT and GRO have to be combined without multiplying the dataframe itself; this will also require the selection language to be adjusted.