Could you please provide .rmd or r file of tutorial as well.

bhattacharya-a-bt / NanoNormIter

Pre-processing of NanoString normalization data, as described in "An approach for normalization and quality control for NanoString RNA expression data" (Bhattacharya and Hamilton et al, 2020)

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Could you please provide .rmd or r file of tutorial as well. #1

Closed amarinderthind closed 11 months ago

amarinderthind commented 4 years ago

Hi Arjun,

Could you please provide a .rmd or .r file of the tutorial as well? It can help the user to execute the pipeline fast. Where can I find the nanostring_functions.R file? do this include readRcc function? or readRCC is just like reading a normal file.

mdidish commented 2 years ago

You should look at sabry_analysis.R to see a real analysis.

nanostring_functions.R : install NanoNormIter devtools::install_github('bhattacharya-a-bt/NanoNormIter') to import RUV_total().
readRCC fuction : NanoStringQCPro package (#BiocManager::install("NanoStringQCPro"))