How to use MGEfinder software to find MGE from assembled genome in spite of raw reads

bhattlab / MGEfinder

A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

MIT License

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Closed shakti83kumar closed 3 years ago

shakti83kumar commented 3 years ago

Hi Sir, I want to use the MGEfinder tool to find mobile genetic elements from assembled genome despite raw reads. How can I implement this program?

durrantmm commented 3 years ago

Take a look at the mgefinder command "wholegenome." This feature hasn't been fully tested, but I have been using it myself and it seems to work well.

shakti83kumar commented 3 years ago

Dear Durrantmm Sir, Thanks to reply me. I will check mentioned commond.