Could I use it on metagenomics data？

bhattlab / MGEfinder

A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

MIT License

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Closed LUCAS-1873 closed 1 year ago

LUCAS-1873 commented 2 years ago

Hi， I want to detect MGE（mobile genetic elements）in the contigs，but I don't know whether ‘MGEfinder’ can solve it？

durrantmm commented 2 years ago

Could be done with a good reference metagenome! I'd recommend something like UHGG or GTDB.