Hello there i'm trying to run a test on Non-toxin CD 's MGE, but i encounter an error which i can't slove

bhattlab / MGEfinder

A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

MIT License

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Hello there i'm trying to run a test on Non-toxin CD 's MGE, but i encounter an error which i can't slove #51

Open CDI-PMCC opened 4 months ago

CDI-PMCC commented 4 months ago

like this , does it means my contents in the .fna file is not fit the workflow? i am able to finish running the 2.4G files used in tutorial , my workdir is like this: ----BJ22012 ----00.assembly ----00.bam ----00.genome bam and bam.bai files was created as tutorial showed but assembly file and genome file was using a assembled but not known which approach file and not sure if it is fit for the workflow , if workflow itself needs a specific format on contents please give a short sample , thanks for anyone who could help.

durrantmm commented 3 months ago

How many files are you working with? What does the working directory look like after you run this? Can you share some of the inferseq files that were generated?

CDI-PMCC commented 3 months ago

How many files are you working with? What does the working directory look like after you run this? Can you share some of the inferseq files that were generated?

it only generated an empty inferseq file and directory only generated 01.mgefinder and 03.results ,i only work with one fna file to test my own work

17wq commented 1 month ago

I had the same problem, have you solved it yet?