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bhattlab
/
lathe
A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
MIT License
69
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18
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Failed to pull singularity image
#27
DCossey
opened
1 month ago
0
Error in rule basecall_final
#26
SergioMG97
opened
2 years ago
0
Lathe Assembly Binning
#25
saras224
opened
3 years ago
1
Assembly summary for lathe
#24
saras224
opened
3 years ago
0
circularization error
#23
saras224
opened
3 years ago
2
Lathe manual
#22
saras224
opened
3 years ago
0
wildcard error in line 242 SnakeMake File
#21
saras224
closed
3 years ago
1
error in line 109 Grid_options
#20
saras224
opened
3 years ago
9
Error in rule extract_bigtigs
#19
jowodo
opened
3 years ago
0
ERROR: No disjointigs were assembled - please check if the read type and genome size parameters are correct
#18
ZhangZhenmiao
opened
3 years ago
0
Merge corrected contigs
#17
kangxiongbin
opened
3 years ago
0
Unable to run lathe due to error raised while building DAG of jobs
#16
jainv45
opened
3 years ago
6
Error: Failed to pull singularity image
#15
Mechah
opened
3 years ago
3
Snake file Issues: InvalidGitRepository
#14
nugrahapraja
opened
3 years ago
0
using fastq file as initial input file
#13
hites77
opened
4 years ago
0
How to use lathe in SGE cluster？
#12
zxgsy520
opened
4 years ago
0
questions
#11
zhaoxvwahaha
opened
4 years ago
0
Can merge the subassemblies from canu and flye？
#10
jinhao94
closed
1 year ago
0
Fix formatting of folder tree
#9
tseemann
opened
4 years ago
0
Allow for multiple sample input and basecalled files as input
#8
dadahan
closed
3 years ago
2
Snakemake reports non-zero error code when checkpoints execute successfully
#7
bsiranosian
opened
4 years ago
0
Snakemake fails at rule circularize_final
#6
brymerr921
opened
5 years ago
5
Rule `no_merge` failed because of symlink reference issue
#5
brymerr921
closed
5 years ago
2
rule medaka_consensus failed to read bam file
#4
bsiranosian
closed
5 years ago
6
new output file format not supported
#3
elimoss
closed
5 years ago
0
rule misassemblies_correct has samtools but no singularity image
#2
bsiranosian
closed
5 years ago
0
rule merge fails when genome_size config !=2
#1
bsiranosian
closed
5 years ago
1