More informative error for missing time variable and going to get frequency.
remove.packages("agcounts")
#> Removing package from '/Library/Frameworks/R.framework/Versions/4.2/Resources/library'
#> (as 'lib' is unspecified)
remotes::install_github("bhelsel/agcounts")
#> Using github PAT from envvar GITHUB_PAT
#> Downloading GitHub repo bhelsel/agcounts@HEAD
#> Skipping 1 packages ahead of CRAN: data.table
#> ── R CMD build ─────────────────────────────────────────────────────────────────
#> * checking for file ‘/private/var/folders/1s/wrtqcpxn685_zk570bnx9_rr0000gr/T/RtmpBZgVhG/remotes109b118f26fea/bhelsel-agcounts-2ca3e5b/DESCRIPTION’ ... OK
#> * preparing ‘agcounts’:
#> * checking DESCRIPTION meta-information ... OK
#> * cleaning src
#> * checking for LF line-endings in source and make files and shell scripts
#> * checking for empty or unneeded directories
#> Omitted ‘LazyData’ from DESCRIPTION
#> * building ‘agcounts_0.6.4.tar.gz’
#> Adding 'agcounts_0.6.4.tgz' to the cache
df = agcounts::agread(system.file("extdata/example.gt3x", package = "agcounts"))
df = setNames(df, c("TIME", "X", "Y", "Z"))
agcounts::calculate_counts(df, epoch = 1)
#> Error in stopifnot(exists(., raw)): exists(., raw) is not TRUE
unloadNamespace("agcounts")
remotes::install_github("muschellij2/agcounts@tibble")
#> Using github PAT from envvar GITHUB_PAT
#> Downloading GitHub repo muschellij2/agcounts@tibble
#> Skipping 1 packages ahead of CRAN: data.table
#> ── R CMD build ─────────────────────────────────────────────────────────────────
#> * checking for file ‘/private/var/folders/1s/wrtqcpxn685_zk570bnx9_rr0000gr/T/RtmpBZgVhG/remotes109b15fe3ffc9/muschellij2-agcounts-e214309/DESCRIPTION’ ... OK
#> * preparing ‘agcounts’:
#> * checking DESCRIPTION meta-information ... OK
#> * cleaning src
#> * checking for LF line-endings in source and make files and shell scripts
#> * checking for empty or unneeded directories
#> Omitted ‘LazyData’ from DESCRIPTION
#> * building ‘agcounts_0.6.4.tar.gz’
df = agcounts::agread(system.file("extdata/example.gt3x", package = "agcounts"))
df = setNames(df, c("TIME", "X", "Y", "Z"))
agcounts::calculate_counts(df, epoch = 1)
#> Error in .get_frequency(raw): Time variable: time not in raw data
unloadNamespace("agcounts")
remove.packages("agcounts")
#> Removing package from '/Library/Frameworks/R.framework/Versions/4.2/Resources/library'
#> (as 'lib' is unspecified)
remotes::install_github("bhelsel/agcounts")
#> Using github PAT from envvar GITHUB_PAT
#> Downloading GitHub repo bhelsel/agcounts@HEAD
#> Skipping 1 packages ahead of CRAN: data.table
#> ── R CMD build ─────────────────────────────────────────────────────────────────
#> * checking for file ‘/private/var/folders/1s/wrtqcpxn685_zk570bnx9_rr0000gr/T/RtmpBZgVhG/remotes109b12fd1abb3/bhelsel-agcounts-2ca3e5b/DESCRIPTION’ ... OK
#> * preparing ‘agcounts’:
#> * checking DESCRIPTION meta-information ... OK
#> * cleaning src
#> * checking for LF line-endings in source and make files and shell scripts
#> * checking for empty or unneeded directories
#> Omitted ‘LazyData’ from DESCRIPTION
#> * building ‘agcounts_0.6.4.tar.gz’
More informative error for missing time variable and going to get frequency.
Created on 2023-09-25 with reprex v2.0.2
Session info
``` r sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.2.1 (2022-06-23) #> os macOS Big Sur ... 10.16 #> system x86_64, darwin17.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz America/New_York #> date 2023-09-25 #> pandoc 3.1.5 @ /usr/local/bin/ (via rmarkdown) #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date (UTC) lib source #> bit 4.0.5 2022-11-15 [1] CRAN (R 4.2.0) #> bit64 4.0.5 2020-08-30 [1] CRAN (R 4.2.0) #> blob 1.2.4 2023-03-17 [1] CRAN (R 4.2.0) #> bslib 0.5.1 2023-08-11 [1] CRAN (R 4.2.0) #> cachem 1.0.8 2023-05-01 [1] CRAN (R 4.2.0) #> callr 3.7.3 2022-11-02 [1] CRAN (R 4.2.0) #> cli 3.6.1 2023-03-23 [1] CRAN (R 4.2.0) #> colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.2.0) #> crancache 0.0.0.9001 2022-05-13 [1] Github (r-lib/crancache@7ea4e47) #> cranlike 1.0.2 2018-11-26 [1] CRAN (R 4.2.0) #> crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.0) #> curl 5.0.1 2023-06-07 [1] CRAN (R 4.2.0) #> data.table 1.14.9 2023-08-21 [1] local #> DBI 1.1.3 2022-06-18 [1] CRAN (R 4.2.0) #> debugme 1.1.0 2017-10-22 [1] CRAN (R 4.2.0) #> desc 1.4.2 2022-09-08 [1] CRAN (R 4.2.0) #> digest 0.6.33 2023-07-07 [1] CRAN (R 4.2.0) #> dplyr 1.1.3 2023-09-03 [1] CRAN (R 4.2.0) #> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.0) #> evaluate 0.21 2023-05-05 [1] CRAN (R 4.2.0) #> fansi 1.0.4 2023-01-22 [1] CRAN (R 4.2.0) #> fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.2.0) #> fs 1.6.3 2023-07-20 [1] CRAN (R 4.2.0) #> generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.0) #> GGIR 2.10-1 2023-08-10 [1] CRAN (R 4.2.0) #> ggplot2 3.4.3 2023-08-14 [1] CRAN (R 4.2.0) #> glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.0) #> gsignal 0.3-5 2022-05-15 [1] CRAN (R 4.2.0) #> gtable 0.3.4 2023-08-21 [1] CRAN (R 4.2.0) #> htmltools 0.5.6 2023-08-10 [1] CRAN (R 4.2.0) #> htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.2.0) #> httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.2.0) #> jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.2.0) #> jsonlite 1.8.7 2023-06-29 [1] CRAN (R 4.2.0) #> knitr 1.44 2023-09-11 [1] CRAN (R 4.2.0) #> later 1.3.1 2023-05-02 [1] CRAN (R 4.2.0) #> lattice 0.21-8 2023-04-05 [1] CRAN (R 4.2.0) #> lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.0) #> lubridate 1.9.2 2023-02-10 [1] CRAN (R 4.2.0) #> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0) #> Matrix 1.6-0 2023-07-08 [1] CRAN (R 4.2.1) #> memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0) #> mime 0.12 2021-09-28 [1] CRAN (R 4.2.0) #> munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.0) #> parsedate 1.3.1 2022-10-27 [1] CRAN (R 4.2.0) #> pillar 1.9.0 2023-03-22 [1] CRAN (R 4.2.0) #> pkgbuild 1.4.2 2023-06-26 [1] CRAN (R 4.2.0) #> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.0) #> png 0.1-8 2022-11-29 [1] CRAN (R 4.2.0) #> prettyunits 1.2.0 2023-09-24 [1] CRAN (R 4.2.0) #> processx 3.8.2 2023-06-30 [1] CRAN (R 4.2.0) #> promises 1.2.1 2023-08-10 [1] CRAN (R 4.2.0) #> ps 1.7.5 2023-04-18 [1] CRAN (R 4.2.0) #> purrr 1.0.1 2023-01-10 [1] CRAN (R 4.2.0) #> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.2.0) #> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.2.0) #> R.oo 1.25.0 2022-06-12 [1] CRAN (R 4.2.0) #> R.utils 2.12.2 2022-11-11 [1] CRAN (R 4.2.0) #> R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0) #> rappdirs 0.3.3 2021-01-31 [1] CRAN (R 4.2.0) #> Rcpp 1.0.11 2023-07-06 [1] CRAN (R 4.2.0) #> reactable 0.4.4 2023-03-12 [1] CRAN (R 4.2.0) #> read.gt3x 1.2.0 2023-09-25 [1] Github (THLfi/read.gt3x@a41037a) #> rematch2 2.1.2 2020-05-01 [1] CRAN (R 4.2.0) #> remotes 2.4.2.1 2023-07-18 [1] CRAN (R 4.2.0) #> reprex 2.0.2 2022-08-17 [1] CRAN (R 4.2.0) #> reticulate 1.32.0 2023-09-11 [1] CRAN (R 4.2.0) #> rlang 1.1.1 2023-04-28 [1] CRAN (R 4.2.0) #> rmarkdown 2.25 2023-09-18 [1] CRAN (R 4.2.0) #> rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.0) #> RSQLite 2.3.1 2023-04-03 [1] CRAN (R 4.2.0) #> rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.2.0) #> sass 0.4.7 2023-07-15 [1] CRAN (R 4.2.0) #> scales 1.2.1 2022-08-20 [1] CRAN (R 4.2.0) #> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0) #> shiny 1.7.5 2023-08-12 [1] CRAN (R 4.2.0) #> stringi 1.7.12 2023-01-11 [1] CRAN (R 4.2.0) #> stringr 1.5.0 2022-12-02 [1] CRAN (R 4.2.0) #> styler 1.10.1 2023-06-05 [1] CRAN (R 4.2.0) #> tibble 3.2.1 2023-03-20 [1] CRAN (R 4.2.0) #> tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.0) #> timechange 0.2.0 2023-01-11 [1] CRAN (R 4.2.0) #> utf8 1.2.3 2023-01-31 [1] CRAN (R 4.2.0) #> vctrs 0.6.3 2023-06-14 [1] CRAN (R 4.2.0) #> withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0) #> xfun 0.40 2023-08-09 [1] CRAN (R 4.2.0) #> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0) #> yaml 2.3.7 2023-01-23 [1] CRAN (R 4.2.0) #> zoo 1.8-12 2023-04-13 [1] CRAN (R 4.2.0) #> #> [1] /Library/Frameworks/R.framework/Versions/4.2/Resources/library #> #> ─ Python configuration ─────────────────────────────────────────────────────── #> python: /Users/johnmuschelli/miniconda3/bin/python3 #> libpython: /Users/johnmuschelli/miniconda3/lib/libpython3.11.dylib #> pythonhome: /Users/johnmuschelli/miniconda3:/Users/johnmuschelli/miniconda3 #> version: 3.11.4 (main, Jul 5 2023, 08:41:25) [Clang 14.0.6 ] #> numpy: /Users/johnmuschelli/miniconda3/lib/python3.11/site-packages/numpy #> numpy_version: 1.25.2 #> pygt3x: /Users/johnmuschelli/miniconda3/lib/python3.11/site-packages/pygt3x #> #> NOTE: Python version was forced by RETICULATE_PYTHON #> #> ────────────────────────────────────────────────────────────────────────────── ```