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CoreGx
Shared code for both PharmacoGx and RadioGx
https://bhklab.github.io/CoreGx/
GNU General Public License v3.0
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Phase II: gDR integration
#130
Open
ChristopherEeles
opened
2 years ago
ChristopherEeles
commented
2 years ago
[ ] Identify a PSet with appropriate control data to be input at the start of the
gDR
pipeline
[ ] Add the
control
data to the
LongTable
object in this PSet and test that coercion to
gDR
format works correctly
[ ] Ensure
LongTable
->
SummarizedExperiment
coercion is compatible with all steps of
gDR
pipeline
[ ] Visualize the results of the
gDR
pipeline with
gDRviz
[ ] Work with Genentech to test database integration of PSet to their database via
gDR
pipeline and REST API
gDRpipelinecontroldata to theLongTableobject in this PSet and test that coercion togDRformat works correctlyLongTable->SummarizedExperimentcoercion is compatible with all steps ofgDRpipelinegDRpipeline withgDRvizgDRpipeline and REST API