bhklab / ORCESTRA-api

https://bhklab.github.io/ORCESTRA-api/
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Create general profile that will be used for all pipelines #9

Open jjjermiah opened 3 months ago

jjjermiah commented 3 months ago

A global profile that is defined in a system-wide or user-specific configuration directory (on Linux, this will be $HOME/.config/snakemake and /etc/xdg/snakemake, you can find the answer for your system via snakemake --help).

A workflow specific profile (introduced in Snakemake 7.29) that is defined via a flag (--workflow-profile) or searched in a default location (profile/default) in the working directory or next to the Snakefile.