can't downlo the Datasets （for example：CCLE）

bhklab / PharmacoDB

Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.

http://pharmacodb.pmgenomics.ca/

GNU General Public License v3.0

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can't downlo the Datasets （for example：CCLE） #220

Closed Patrickstar-flash closed 2 years ago

Patrickstar-flash commented 2 years ago

CCLE <- downloadPSet(CCLE) Error in downloadPSet(CCLE) : object 'CCLE' not found

ChristopherEeles commented 2 years ago

Hi @Patrickstar-flash,

It looks like you are passing a variable instead of a string to the function, add quotes around the dataset name. Also note that the string needs to match the PSet Name column of the table returned by availablePSets(), so "CCLE" needs to be "CCLE_2015".

See the documentation in ?availablePSets and ?downloadPSet for more information.

Best, Christopher Eeles Software Developer | BHK Lab | PM-Research

Patrickstar-flash commented 2 years ago

Thanks，but I still can't download the datasets，I got this two lines R code from the https://pharmacodb.pmgenomics.ca/pharmacogx. I want to ask, if there is another way , if I download the dataset by browser, how could I put it in the pakages? sorry, english is not good, am I clear?