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bhklab / PharmacoGx

R package to analyze large-scale pharmacogenomic datasets.
http://pharmacodb.pmgenomics.ca
GNU General Public License v3.0
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Warning messages for checkPsetStructure function of GDSC2020v2 Pset #151

Closed raymond126 closed 6 months ago

raymond126 commented 1 year ago

# Minimal reproducible example library(PharmacoGx) GDSC_2020v2 <- readRDS("Pset_GDSC2020.rds") PharmacoGx::checkPsetStructure(GDSC_2020v2)

# Output Warning in PharmacoGx::checkPsetStructure(GDSC2): Kallisto_0.46.1.rnaseq: Symbol does not exist in rowData (features) columns

Warning in PharmacoGx::checkPsetStructure(GDSC2): Kallisto_0.46.1.rnaseq.counts: Symbol does not exist in rowData (features) columns