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bhklab / PharmacoGx

R package to analyze large-scale pharmacogenomic datasets.
http://pharmacodb.pmgenomics.ca
GNU General Public License v3.0
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Help analyzing existing Datasets [Question] #152

Open nickhsmith opened 7 months ago

nickhsmith commented 7 months ago

I am new to PharmacoGx and drug screens at large, and it seems like there are a lot of tools, but I am struggling to understand the use for all of them.

My goal is to for the GDSC dataset look at drug-response between the Colon vs Large intestine cell lines for a certain drug. Is there a way to plot/compare/show the difference between one group of cell lines and another group of cell lines for a single drug?

Or do I need to just manipulate the treatmentResponse data to get my groups?

Thanks in advance