bhklab RadioGx issues - Githubissues

bhklab / RadioGx

RadioGx and PharmacoGx: Integrated prediction tools for combining radiotherapy with systemic agents

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Devel

#72 jjjermiah closed 1 year ago
0
re-do bioc GHA

#71 jjjermiah closed 1 year ago
0
fixed param issue

#70 jjjermiah closed 1 year ago
0
radSensitivitySig works on smallCleveland, but not Cleveland

#69 jamiedean opened 1 year ago
0
Feature slot rename chris

#68 ChristopherEeles closed 2 years ago
0
results of family are never stored?

#67 p-smirnov closed 1 year ago
0
Font sizes of x, y labels in the plot function not working

#66 vmsatya closed 7 months ago
0
Issue with rsquared value in plot function

#65 vmsatya closed 7 months ago
0
Include Rsquare in the legend for the plot

#64 vmsatya closed 6 years ago
1
Include {0Gy,1} to the plotCurve function

#63 vmsatya closed 6 years ago
1
y axis labels for lq plot

#62 vmsatya closed 6 years ago
1
Yard mathematical function should be added

#61 vmsatya closed 7 months ago
0
Function to filter noisy LQ fit curves based on rsquare value

#60 vmsatya closed 7 months ago
0
More than one curve as input to the plot function

#59 vmsatya closed 6 years ago
1
Y axis should be to the base 10 for plotCurve function

#58 vmsatya closed 7 years ago
2
Issue with optimization function

#57 vmsatya closed 7 years ago
0
Radiogx Installation issue

#56 vmsatya closed 7 years ago
1
Critical Bug: Different results using computeAUC and LQmodel functions

#55 vmsatya closed 7 years ago
3
Add proton therapy dose-response data

#54 vmsatya closed 7 years ago
1
2 cell lines duplicated in the Yard et al. study

#53 vmsatya closed 7 years ago
0
Add oxygen concentration column in the Rset

#52 vmsatya closed 7 months ago
1
radSensitivitySig function takes only 88 cell lines: problem with cell line annotations?

#51 vmsatya closed 7 years ago
0
Cleveland Rset not working

#50 vmsatya closed 7 years ago
0
Compare AUC's between NLS, Normal/Cauchy, Published

#49 vmsatya closed 7 years ago
0
Comparison of parameters using nls vs. linearQuadraticModel

#48 vmsatya closed 7 years ago
1
Unstable AUC as a function of variance width of the truncated distributions

#47 vmsatya closed 7 years ago
0
Round3: Beta value not taken in computeSF2 function

#46 vmsatya closed 7 years ago
1
Round3: computeAUC function wrong parameters

#45 vmsatya closed 7 years ago
0
Round3: Wrong AUC values

#44 vmsatya closed 7 years ago
5
computeAUC: Multiple dose points with a single SF value (probable issue with initial guess ?)

#43 vmsatya closed 7 years ago
0
Did not import the function Trapz for AUC calculation?

#42 vmsatya closed 7 years ago
0
linearQuadraticModel function removes negative SF values for the fit?

#41 vmsatya closed 7 years ago
1
Round3: linearQuadraticModel function not working

#40 vmsatya closed 7 years ago
0
Method to calculate fitted and actual AUC

#39 vmsatya closed 7 years ago
1
Incorrect estimate of AUC value (probable error in the initial parameter guess ?)

#38 vmsatya closed 7 years ago
0
Error in computeSF2 function

#37 vmsatya closed 7 years ago
1
computeSF2 should return fraction of cells

#36 vmsatya closed 7 years ago
0
Width of the error distribution (scale option) sensitive to optimization method(?)

#35 vmsatya closed 7 years ago
1
Optimization function: Wrong values fitted when the error bounds are less than zero

#34 vmsatya closed 7 years ago
0
Error in the optimization function

#33 vmsatya closed 7 years ago
2
Error with the residual distributions, Cauchy vs. Normal

#32 vmsatya closed 7 years ago
1
Consistency of logarithm base used across all functions

#31 vmsatya closed 7 years ago
2
linearQuadraticModel function should not fit the curve with 2 points

#30 vmsatya closed 7 years ago
0
Error in linearQuadraticModel function with identical fraction of cells for all dose points

#29 vmsatya closed 7 years ago
0
LQmodel function should not take negative values

#28 vmsatya closed 7 years ago
0
Increase the default bounds for alpha and beta

#27 vmsatya closed 7 years ago
0
Goodness of fit

#26 vmsatya closed 6 years ago
2
computeSF2 should return fraction and not in logarithmic value

#25 vmsatya closed 7 years ago
0
Units of Dose (x-axis) in the LQmodel fit

#24 vmsatya closed 7 years ago
0
Full set of dose response points required for the computeD10 function

#23 vmsatya closed 7 years ago
0