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bhklab / med-imagetools

Transparent and reproducible medical image processing pipelines in Python.
MIT License
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Does autopipeline take care of the position of the input dicoms #62

Open SWKoreaBME opened 1 year ago

SWKoreaBME commented 1 year ago

Hi,

I have a question regarding the positional adjustment of input dicom files. Does autopipeline make the dicom files into the constant position for all files? For example, some might be from head-to-toe, and others might be toe-to-head. In this case does it automatically allign all of the files into one position?

skim2257 commented 1 year ago

Currently, it doesn't explicitly use any functions for alignment/positioning. This should probably be 1. tested on a heterogeneous dataset, and 2. added as a feature.

skim2257 commented 1 year ago

position crawling was added around version 1.5, but this isn't currently incorporated into AutoPipeline.

SWKoreaBME commented 1 year ago

Sounds good, I will use it and will keep you updated! 🔥