Closed malcook closed 6 years ago
The plugin is quite slow since it’s doing extensive calculations so it definitely sits in the “loading” state for awhile.
I’m on vacation for a few more days but I’ll check into when I get back.
Brigitte
On Mar 16, 2018, at 3:48 PM, Malcolm Cook notifications@github.com wrote:
Hi - not sure if this should be reported here
Or here: GMOD/jbrowse#1025
Thanks for motifdens. Looking forward to getting it working. I am hosting yeast proteome in Jbrowse and have some AA patterns whose density I hope to easily visualize with this.
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I think the domReady is what was causing issues with jbrowse 1.13. The webpack build basically doesn't use domReady at all anymore and it gets filtered out but it didnt filter it out since it was in middle of the dependency list.
@malcook If you want, you can manually remove domReady from that list of dependencies and it should work again, maybe that can be incorporated into the code eventually
Specifically in the file js/View/Dialog/MotifDensityDialog.js
I've removed that dependency. It should work now (I can't get 1.13.0 to work at all to test this for myself).
@malcook do you have any console errors displayed? Is the problematic JBrowse online somewhere that I can see it?
@malcook or alternatively could you just zip or tar up the whole thing, with data, and put it somewhere I can download it?
@rbuels - thanks for your offer of help on this.
This is not urgent at all for me as I have since discovered alternate way of meeting my motif density visualization needs. They are currently quite simple, being limited to making a few selected AA residues stand out, which I accomplished with creation of a new custom proteinColoringScheme in css/protein.css.
EDIT: IGNORE THE BELOW - IT IS UNRELATED ISSUE APPARENTLY RELATED TO NOT HVAING INDEXED ANY NAMES YET
But, yes, to your question, there is console error - screen snapshot is below and full log below that.
(I am working behind firewall - I could tar/zip it up but I bet you figure this out looking at the log - let me know!).
13:35:07.526 main.js:22 MotifDensityPlugin plugin starting - v2.1.0 13:35:07.658 xhr.js:267 GET http://beta.sgc.loc:3000/data/names/root.json 404 (Not Found) xhr @ xhr.js:267 Array.concat.dojo.xhr @ xhr.js:615 Array.concat.dojo.xhrGet @ xhr.js:643 constructor @ LazyTrie.js:66 (anonymous) @ declare.js:473 (anonymous) @ Browser.js:624 _milestoneFunction @ Browser.js:1992 loadNames @ Browser.js:598 (anonymous) @ Browser.js:178 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:328 notify @ Deferred.js:187 complete @ Deferred.js:168 resolve.callback @ Deferred.js:248 addResult @ DeferredList.js:54 (anonymous) @ DeferredList.js:37 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:358 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:589 finish @ lazyload.js:111 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 finish @ lazyload.js:113 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 css @ lazyload.js:365 _loadCSS @ Browser.js:589 (anonymous) @ Browser.js:352 forEach @ array.js:247 (anonymous) @ Browser.js:333 (anonymous) @ lang.js:385 contextRequire @ bootstrap 6bd6a93646d3ea06d82a:264 req @ bootstrap 6bd6a93646d3ea06d82a:158 (anonymous) @ Browser.js:330 _milestoneFunction @ Browser.js:1992 initPlugins @ Browser.js:276 (anonymous) @ Browser.js:177 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:2074 (anonymous) @ lang.js:385 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ all.js:68 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 signalListener @ Deferred.js:45 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 handleResponse @ xhr.js:88 onLoad @ xhr.js:123 XMLHttpRequest.send (async) xhr @ xhr.js:267 load @ JB_json_v1.js:45 (anonymous) @ ConfigManager.js:178 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 _loadInclude @ ConfigManager.js:170 (anonymous) @ ConfigManager.js:146 map @ array.js:289 _loadRecur @ ConfigManager.js:144 _loadIncludes @ ConfigManager.js:163 (anonymous) @ ConfigManager.js:62 getFinalConfig @ ConfigManager.js:78 (anonymous) @ Browser.js:2051 _milestoneFunction @ Browser.js:1992 loadConfig @ Browser.js:2049 (anonymous) @ Browser.js:168 callback @ ready.js:121 onEvent @ ready.js:47 processQ @ domReady.js:49 detectReady @ domReady.js:62 13:35:07.660 xhr.js:440 ErrorCtor {message: "Unable to load data/names/root.json status: 404", response: {…}, status: 404, responseText: "<!DOCTYPE html>↵↵
↵<meta char… GET /data/names/root.json↵↵↵", xhr: XMLHttpRequest, …}message: "Unable to load data/names/root.json status: 404"response: {url: "data/names/root.json", options: TMP, getHeader: ƒ, xhr: XMLHttpRequest, loaded: 159, …}responseText: "<!DOCTYPE html>↵↵↵↵Cannot GET /data/names/root.json↵↵↵"status: 404xhr: XMLHttpRequest {onreadystatechange: null, readyState: 4, timeout: 0, withCredentials: false, upload: XMLHttpRequestUpload, …}stack: "Error: Unable to load data/names/root.json status: 404↵ at new ErrorCtor (http://beta.sgc.loc:3000/dist/0.bundle.js:59597:21)↵ at Deferred.handleResponse (http://beta.sgc.loc:3000/dist/0.bundle.js:5107:14)↵ at XMLHttpRequest.onLoad (http://beta.sgc.loc:3000/dist/0.bundle.js:5136:9)"__proto__: Error _deferError @ xhr.js:440 (anonymous) @ xhr.js:400 notify @ Deferred.js:187 complete @ Deferred.js:168 reject.errback @ Deferred.js:263 notify @ Deferred.js:202 complete @ Deferred.js:168 reject.errback @ Deferred.js:263 notify @ Deferred.js:202 complete @ Deferred.js:168 reject.errback @ Deferred.js:263 (anonymous) @ xhr.js:635 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.reject.reject @ Deferred.js:219 signalDeferred @ Deferred.js:84 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.reject.reject @ Deferred.js:219 signalDeferred @ Deferred.js:84 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.reject.reject @ Deferred.js:219 signalDeferred @ Deferred.js:84 signalListener @ Deferred.js:55 signalWaiting @ Deferred.js:28 Deferred.reject.reject @ Deferred.js:219 signalDeferred @ Deferred.js:84 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.reject.reject @ Deferred.js:219 handleResponse @ xhr.js:95 onLoad @ xhr.js:123 XMLHttpRequest.send (async) xhr @ xhr.js:267 Array.concat.dojo.xhr @ xhr.js:615 Array.concat.dojo.xhrGet @ xhr.js:643 constructor @ LazyTrie.js:66 (anonymous) @ declare.js:473 (anonymous) @ Browser.js:624 _milestoneFunction @ Browser.js:1992 loadNames @ Browser.js:598 (anonymous) @ Browser.js:178 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:328 notify @ Deferred.js:187 complete @ Deferred.js:168 resolve.callback @ Deferred.js:248 addResult @ DeferredList.js:54 (anonymous) @ DeferredList.js:37 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:358 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:589 finish @ lazyload.js:111 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 finish @ lazyload.js:113 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 css @ lazyload.js:365 _loadCSS @ Browser.js:589 (anonymous) @ Browser.js:352 forEach @ array.js:247 (anonymous) @ Browser.js:333 (anonymous) @ lang.js:385 contextRequire @ bootstrap 6bd6a93646d3ea06d82a:264 req @ bootstrap 6bd6a93646d3ea06d82a:158 (anonymous) @ Browser.js:330 _milestoneFunction @ Browser.js:1992 initPlugins @ Browser.js:276 (anonymous) @ Browser.js:177 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:2074 (anonymous) @ lang.js:385 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ all.js:68 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 signalListener @ Deferred.js:45 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 handleResponse @ xhr.js:88 onLoad @ xhr.js:123 XMLHttpRequest.send (async) xhr @ xhr.js:267 load @ JB_json_v1.js:45 (anonymous) @ ConfigManager.js:178 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 _loadInclude @ ConfigManager.js:170 (anonymous) @ ConfigManager.js:146 map @ array.js:289 _loadRecur @ ConfigManager.js:144 _loadIncludes @ ConfigManager.js:163 (anonymous) @ ConfigManager.js:62 getFinalConfig @ ConfigManager.js:78 (anonymous) @ Browser.js:2051 _milestoneFunction @ Browser.js:1992 loadConfig @ Browser.js:2049 (anonymous) @ Browser.js:168 callback @ ready.js:121 onEvent @ ready.js:47 processQ @ domReady.js:49 detectReady @ domReady.js:62 13:35:07.705 xhr.js:267 XHR finished loading: GET "http://beta.sgc.loc:3000/jbrowse.conf". xhr @ xhr.js:267 load @ JB_json_v1.js:45 (anonymous) @ ConfigManager.js:178 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 _loadInclude @ ConfigManager.js:170 (anonymous) @ ConfigManager.js:146 map @ array.js:289 _loadRecur @ ConfigManager.js:144 _loadIncludes @ ConfigManager.js:163 (anonymous) @ ConfigManager.js:62 getFinalConfig @ ConfigManager.js:78 (anonymous) @ Browser.js:2051 _milestoneFunction @ Browser.js:1992 loadConfig @ Browser.js:2049 (anonymous) @ Browser.js:168 callback @ ready.js:121 onEvent @ ready.js:47 processQ @ domReady.js:49 detectReady @ domReady.js:62 13:35:07.706 xhr.js:267 XHR finished loading: GET "http://beta.sgc.loc:3000/jbrowse_conf.json". xhr @ xhr.js:267 load @ JB_json_v1.js:45 (anonymous) @ ConfigManager.js:178 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 _loadInclude @ ConfigManager.js:170 (anonymous) @ ConfigManager.js:146 map @ array.js:289 _loadRecur @ ConfigManager.js:144 _loadIncludes @ ConfigManager.js:163 (anonymous) @ ConfigManager.js:62 getFinalConfig @ ConfigManager.js:78 (anonymous) @ Browser.js:2051 _milestoneFunction @ Browser.js:1992 loadConfig @ Browser.js:2049 (anonymous) @ Browser.js:168 callback @ ready.js:121 onEvent @ ready.js:47 processQ @ domReady.js:49 detectReady @ domReady.js:62 13:35:07.735 GenomeView.js:62 >>> view constructor 13:35:08.190 xhr.js:267 XHR failed loading: GET "http://beta.sgc.loc:3000/data/names/root.json". xhr @ xhr.js:267 Array.concat.dojo.xhr @ xhr.js:615 Array.concat.dojo.xhrGet @ xhr.js:643 constructor @ LazyTrie.js:66 (anonymous) @ declare.js:473 (anonymous) @ Browser.js:624 _milestoneFunction @ Browser.js:1992 loadNames @ Browser.js:598 (anonymous) @ Browser.js:178 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:328 notify @ Deferred.js:187 complete @ Deferred.js:168 resolve.callback @ Deferred.js:248 addResult @ DeferredList.js:54 (anonymous) @ DeferredList.js:37 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:358 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:589 finish @ lazyload.js:111 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 finish @ lazyload.js:113 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 css @ lazyload.js:365 _loadCSS @ Browser.js:589 (anonymous) @ Browser.js:352 forEach @ array.js:247 (anonymous) @ Browser.js:333 (anonymous) @ lang.js:385 contextRequire @ bootstrap 6bd6a93646d3ea06d82a:264 req @ bootstrap 6bd6a93646d3ea06d82a:158 (anonymous) @ Browser.js:330 _milestoneFunction @ Browser.js:1992 initPlugins @ Browser.js:276 (anonymous) @ Browser.js:177 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:2074 (anonymous) @ lang.js:385 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ all.js:68 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 signalListener @ Deferred.js:45 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 handleResponse @ xhr.js:88 onLoad @ xhr.js:123 XMLHttpRequest.send (async) xhr @ xhr.js:267 load @ JB_json_v1.js:45 (anonymous) @ ConfigManager.js:178 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 _loadInclude @ ConfigManager.js:170 (anonymous) @ ConfigManager.js:146 map @ array.js:289 _loadRecur @ ConfigManager.js:144 _loadIncludes @ ConfigManager.js:163 (anonymous) @ ConfigManager.js:62 getFinalConfig @ ConfigManager.js:78 (anonymous) @ Browser.js:2051 _milestoneFunction @ Browser.js:1992 loadConfig @ Browser.js:2049 (anonymous) @ Browser.js:168 callback @ ready.js:121 onEvent @ ready.js:47 processQ @ domReady.js:49 detectReady @ domReady.js:62 13:35:08.194 xhr.js:267 XHR finished loading: GET "http://beta.sgc.loc:3000/data/seq/refSeqs.json". xhr @ xhr.js:267 (anonymous) @ Browser.js:536 _milestoneFunction @ Browser.js:1992 loadRefSeqs @ Browser.js:520 (anonymous) @ Browser.js:182 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 (anonymous) @ Browser.js:179 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:328 notify @ Deferred.js:187 complete @ Deferred.js:168 resolve.callback @ Deferred.js:248 addResult @ DeferredList.js:54 (anonymous) @ DeferredList.js:37 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:358 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:589 finish @ lazyload.js:111 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 finish @ lazyload.js:113 pollWebKit @ lazyload.js:326 setTimeout (async) pollWebKit @ lazyload.js:335 load @ lazyload.js:247 css @ lazyload.js:365 _loadCSS @ Browser.js:589 (anonymous) @ Browser.js:352 forEach @ array.js:247 (anonymous) @ Browser.js:333 (anonymous) @ lang.js:385 contextRequire @ bootstrap 6bd6a93646d3ea06d82a:264 req @ bootstrap 6bd6a93646d3ea06d82a:158 (anonymous) @ Browser.js:330 _milestoneFunction @ Browser.js:1992 initPlugins @ Browser.js:276 (anonymous) @ Browser.js:177 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ Browser.js:2074 (anonymous) @ lang.js:385 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 (anonymous) @ all.js:68 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 signalListener @ Deferred.js:45 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 (anonymous) @ Deferred.js:70 signalListener @ Deferred.js:37 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:58 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 signalDeferred @ Deferred.js:81 signalListener @ Deferred.js:52 signalWaiting @ Deferred.js:28 Deferred.resolve @ Deferred.js:192 handleResponse @ xhr.js:88 onLoad @ xhr.js:123 XMLHttpRequest.send (async) xhr @ xhr.js:267 load @ JB_json_v1.js:45 (anonymous) @ ConfigManager.js:178 signalListener @ Deferred.js:37 Deferred.then.promise.then @ Deferred.js:258 _loadInclude @ ConfigManager.js:170 (anonymous) @ ConfigManager.js:146 map @ array.js:289 _loadRecur @ ConfigManager.js:144 _loadIncludes @ ConfigManager.js:163 (anonymous) @ ConfigManager.js:62 getFinalConfig @ ConfigManager.js:78 (anonymous) @ Browser.js:2051 _milestoneFunction @ Browser.js:1992 loadConfig @ Browser.js:2049 (anonymous) @ Browser.js:168 callback @ ready.js:121 onEvent @ ready.js:47 processQ @ domReady.js:49 detectReady @ domReady.js:62
Hi - not sure if this should be reported here
Or here: https://github.com/GMOD/jbrowse/issues/1025
Thanks for motifdens. Looking forward to getting it working. I am hosting yeast proteome in Jbrowse and have some AA patterns whose density I hope to easily visualize with this.