bhofmei / jbplugin-motifdens

Multi-lined heatmaps for different sequence motifs
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codon bias #3

Open AimerGDiaz opened 2 years ago

AimerGDiaz commented 2 years ago

Hi Brigitte,

I'm a big fan of your plugins, I think this one, in particular, has the potential to also cover and display an exciting phenomenon in molecular biology: codon usage bias.

I wonder if it's possible to restrict the sequence search according to a coordinate file (where this one can indicate the open reading frame), and also if the color intensity might depend on the usage frequency of a codon (0 - 1 range), maybe a histogram plot may be more suitable for this, as there are so many codons

Best