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bichangwei / PMAT

An efficient assembly tool for plant mitochondrial genome
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How to activate the "disentangle_mitogenome_from_graph.py" module? #14

Open RagVid opened 6 months ago

RagVid commented 6 months ago

In the paper Changwei et al. 2024 the process of obtaining .fasta files from the other resulting files is described and used to get the published results. However, the resulting files listed here do not include the disentangled .fasta files. I'm wondering if there's any easy way to use the disentangle_mitogenome_from_graph.py module? I'm not very experienced in running python scripts on linux. I have PMAT installed on the cluster I'm working on, and it works nicely. I don't have admin rights. Thank you for any help or advice!

bichangwei commented 6 months ago

This script is currently deactivated and we are optimizing it. If you want to get the final mitogenome, I recommend you use Bandage.