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bichangwei / PMAT

An efficient assembly tool for plant mitochondrial genome
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question about error for using apptainer #23

Closed cutykaka closed 2 months ago

cutykaka commented 2 months ago

Hello. I've tried to use PMAT for mitochondria DNA assembly . However, when I conducted the basic command for autoMito, I got the same error as below.

FileNotFoundError: [Errno 2] No such file or directory: 'apptainer' [47023] Failed to execute script 'PMAT' due to unhandled exception!

But, I already installed apptainer using conda. What's the problem for this? Should I need to install apptainer locally or any idea to solve this problem?

Thanks.

bichangwei commented 2 months ago

Hello, the encountered error stems from the fact that Apptainer is not installed as a root application. To resolve this, kindly request an administrator to install it for you.

cutykaka commented 2 months ago

Thank you! solved!