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bichangwei / PMAT

An efficient assembly tool for plant mitochondrial genome
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error in "Building a tree for 730524756 seeds... Computing long overlap alignments..." #6

Open JUNKELII opened 10 months ago

JUNKELII commented 10 months ago

880000 of 1892275 -> 881000 of 1892275 -> 882000 of 1892275 -> 883000 of 1892275 -> 884000 of 1892275 -> 885000 of 1892275 -> 886000 of 1892275 -> 887000 of 1892275 -> 888000 of 1892275 -> 889000 of 1892275 -> 890000 of 1892275 -> 891000 of 1892275 -> 892000 of 1892275 -> 893000 of 1892275 -> 894000 of 1892275 -> 895000 of 1892275 -> 896000 of 1892275 -> 897000 of 1892275 -> 898000 of 1892275 -> 899000 of 1892275 -> 900000 of 1892275 -> 901000 of 1892275 -> 902000 of 1892275 -> 903000 of 1892275 -> 904000 of 1892275 -> 905000 of 1892275 -> 906000 of 1892275 -> 907000 of 1892275 -> 908000 of 1892275 -> 909000 of 1892275 -> 910000 of 1892275 -> 911000 of 1892275 -> 912000 of 1892275 -> 913000 of 1892275 -> 914000 of 1892275 -> 915000 of 1892275 -> 916000 of 1892275 -> 917000 of 1892275 -> 918000 of 1892275 -> 919000 of 1892275 -> 920000 of 1892275 -> 921000 of 1892275 -> 922000 of 1892275 -> 923000 of 1892275 -> 924000 of 1892275 -> 925000 of 1892275 -> 926000 of 1892275 -> 927000 of 1892275 -> 928000 of 1892275 -> 929000 of 1892275 -> 930000 of 1892275 -> 931000 of 1892275 -> 932000 of 1892275 -> 933000 of 1892275 -> 934000 of 1892275 -> 935000 of 1892275 -> 936000 of 1892275 -> 937000 of 1892275 -> 938000 of 1892275 -> 939000 of 1892275 -> 940000 of 1892275 -> 941000 of 1892275 -> 942000 of 1892275 -> 943000 of 1892275 -> 944000 of 1892275 -> 945000 of 1892275 -> 946000 of 1892275 -> 947000 of 1892275 -> 948000 of 1892275 -> 949000 of 1892275 -> 950000 of 1892275 -> 951000 of 1892275 -> 952000 of 1892275 -> 953000 of 1892275 -> 954000 of 1892275 -> 955000 of 1892275 -> 956000 of 1892275 -> 957000 of 1892275 -> 958000 of 1892275 -> 959000 of 1892275 -> 960000 of 1892275 -> 961000 of 1892275 -> 962000 of 1892275 -> 963000 of 1892275 -> 964000 of 1892275 -> 965000 of 1892275 -> 966000 of 1892275 -> 967000 of 1892275 -> 968000 of 1892275 -> 969000 of 1892275 -> 970000 of 1892275 -> 971000 of 1892275 -> 972000 of 1892275 -> 973000 of 1892275 -> 974000 of 1892275 -> 975000 of 1892275 -> 976000 of 1892275 -> 977000 of 1892275 -> 978000 of 1892275 -> 979000 of 1892275 -> 980000 of 1892275 -> 981000 of 1892275 -> 982000 of 1892275 -> 983000 of 1892275 -> 984000 of 1892275 -> 985000 of 1892275 -> 986000 of 1892275 Reads assembly end. 2023-11-24 22:57:13 Assembly results path: /mnt/sdc1/lijk/CIME/CIME/assembly_result [ WARNING 2023-11-24 22:57:13 ] Data assembly error: Please change the -fc or -sd option.

Here's the command I ran: nohup PMAT autoMito -i split.fa -o ./CIME -st hifi -g 400m -m & And I successfully ran it on another individual, but an error is reported here, and I don't know why. Should I set the parameters of -fc or -sd?

yunmika commented 10 months ago

Hi, you can try to change the parameter -fc.