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bids-apps / CPAC

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
Apache License 2.0
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Get slice timings #12

Closed egarza closed 6 years ago

egarza commented 6 years ago

Perhaps it`s a silly question but, reading the manual it says BIDS needs the precise slice acquisition times to perform slice timing correction. What tool can I use to get the times? Dcm2Bids doesn't do it nor I can get it from the nifti header so I guess it should be on the DICOM header? Or how do you guys do it?

Thanks

Ed

chrisgorgo commented 6 years ago

dcm2niix and heudiconv are able to extract that information from DICOMs. It's always good to validate it with the sequence specification.

On Sat, Aug 5, 2017 at 8:28 PM, Eduardo Garza-Villarreal < notifications@github.com> wrote:

Perhaps it`s a silly question but, reading the manual it says BIDS needs the precise slice acquisition times to perform slice timing correction. What tool can I use to get the times? Dcm2Bids doesn't do it nor I can get it from the nifti header so I guess it should be on the DICOM header? Or how do you guys do it?

Thanks

Ed

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egarza commented 6 years ago

Thanks, I'll try that. Also, I've been told to convert from Dicom to Nifti using AFNI for the same info.