'Configuration' object has no attribute 'disable_log'

[rsingh5]

I have a simple configuration Pipeline_config.txt to run CPAC and I am getting 'Configuration' object has no attribute 'disable_log' error. I have tried different configuration options but not able to find how to fix it. Can you please help?

Here is the log 180130-20:12:37,959 workflow INFO: VERSION: CPAC 1.0.2

Setting maximum number of cores per participant to 1 Setting number of participants at once to 1 Setting OMP_NUM_THREADS to 1 Setting MKL_NUM_THREADS to 1 Setting ANTS/ITK thread usage to 1

Maximum potential number of cores that might be used during this run: 1

++ 3dcalc: AFNI version=AFNI_16.3.08 (Nov 4 2016) [64-bit] ++ Authored by: A cast of thousands Process Process-7: Traceback (most recent call last): File "/usr/local/bin/miniconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap self.run() File "/usr/local/bin/miniconda/lib/python2.7/multiprocessing/process.py", line 114, in run self._target(*self._args, **self._kwargs) File "/usr/local/bin/miniconda/lib/python2.7/site-packages/CPAC/pipeline/cpac_pipeline.py", line 291, in prep_workflow if c.disable_log and c.disable_log == True: AttributeError: 'Configuration' object has no attribute 'disable_log'

[rsingh5]

I even tried bids/cpac:v1.0.2_disable_log_2 Docker app but I am getting same issue. Any idea what can be wrong?

[sgiavasis]

Hello @rsingh5,

I think this is related to a change in the pipeline config parameter names. The option to disable logging was introduced in CPAC v1.0.2, but the template pipeline config might not have the "disable_log" key introduced.

This changed in CPAC v1.0.3- can you try this fork and branch and see if it resolves your problem? https://github.com/sgiavasis/CPAC/tree/v1.0.3_merged

Best, Steve