bids-apps / MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
http://www.mrtrix.org/
Apache License 2.0
49 stars 26 forks source link

docker documentation inconsistent: output vs outputs #34

Closed dkp closed 5 years ago

dkp commented 5 years ago

https://github.com/BIDS-Apps/MRtrix3_connectome

To run the script in participant level mode (for processing one subject only), use e.g.:

$ docker run -i --rm \ -v /Users/yourname/data:/bids_dataset \ -v /Users/yourname/outputs:/outputs \ bids/mrtrix3_connectome \ /bids_dataset /outputs participant --participant_label 01 --parcellation desikan Following processing of all participants, the script can be run in group analysis mode using e.g.:

$ docker run -i --rm \ -v /Users/yourname/data:/bids_dataset \ -v /Users/yourname/output:/output \ bids/mrtrix3_connectome \ /bids_dataset /output group

Lestropie commented 5 years ago

Thanks for the spot; this will get revised by 0b121e63 when I finalise the next update and commit a new tag.