participant: Modify ANTs MNI registration

bids-apps / MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

http://www.mrtrix.org/

Apache License 2.0

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participant: Modify ANTs MNI registration #83

Closed Lestropie closed 3 years ago

Lestropie commented 3 years ago

Was getting incomplete coverage of the brain from the transformed parcellation image following the WarpImageMultiTransform command; so have updated the T1 - MNI registration to use the ANTs function calls as suggested in:

Tustison, N.; Avants, B. Explicit B-spline regularization in diffeomorphic image registration. Frontiers in Neuroinformatics, 2013, 7, 39