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bids-apps / MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
http://www.mrtrix.org/
Apache License 2.0
50 stars 26 forks source link

minor typo in documentation (participant1 instead of participant) #89

Closed dkp closed 4 years ago

dkp commented 4 years ago

To run the script in participant1 level mode (for processing one subject only), use e.g.:

$ docker run -i --rm \ -v /Users/yourname/data:/bids_dataset \ -v /Users/yourname/output:/output \ bids/mrtrix3_connectome \ /bids_dataset /output participant1 --participant_label 01 --parcellation desikan

Lestropie commented 4 years ago

Yes, I'd noted already that the README wasn't fully up to date with 0.5.0 changes. Earlier the "preproc" and "participant" analysis levels were called "participant1" and "participant2", hence the error. I'll try to expand on the instructions a little bit more.

Lestropie commented 4 years ago

Closed by 2f4f793a.