bids-apps / QAP

PCP Quality Assessment Protocol
Apache License 2.0
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absence of command line options overrides provided pipeline.yml #6

Open alexlicohen opened 7 years ago

alexlicohen commented 7 years ago

the pipeline file is loaded before the command line options are parsed, leading to the fact that absence of a command line option --report for instance, overriding the settings in a specified pipeline file.

One solution would be a disclaimer to use either the command line options OR provide a pipeline file.

Another would be to add a line re-loading the pipeline_file if not equal to /qap_resources/default.yml