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bids-apps / SPM

BIDS App containing an instance of the SPM software.
https://hub.docker.com/r/bids/spm/tags
Apache License 2.0
14 stars 12 forks source link

single-trial GLM integration #14

Open jordandekraker opened 5 years ago

jordandekraker commented 5 years ago

We wrote a script to load in fmriprep outputs and then run single trial GLMs using SPM. We are wondering if it would be worthwhile to integrate our code with your BIDS App (i.e. using spm_BIDS as the data loader, and providing the single-trial GLM script as an example of a configuration file). We weren't too sure if this repo is still active, so if you're interested then let us know!

gllmflndn commented 5 years ago

Hi @jordandekraker Yes, that would definitely be interesting. The SPM BIDS App is mainly a proof of concept and all of the remaining hard work is to define the configuration files. Best would indeed be to use spm_BIDS and spm_load (https://en.wikibooks.org/wiki/SPM/BIDS). This might require some further work as spm_BIDS works on the raw data but not yet on the derived data from, eg, fmriprep.

jordandekraker commented 5 years ago

Great, my colleague @hyang336 and I will try and submit a pull request in the next few days.