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bids-apps / SPM

BIDS App containing an instance of the SPM software.
https://hub.docker.com/r/bids/spm/tags
Apache License 2.0
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Increasing the log verbosity #9

Closed chrisgorgo closed 6 years ago

chrisgorgo commented 7 years ago

I'm trying to run SPM on a dataset I unfortunately cannot share and I am getting the following error:

SPM12, version 7048 (standalone)
  MATLAB, version 9.2.0.538062 (R2017a)
   ___  ____  __  __                                            
  / __)(  _ \(  \/  )                                           
  \__ \ )___/ )    (   Statistical Parametric Mapping           
  (___/(__)  (_/\/\_)  SPM12 - http://www.fil.ion.ucl.ac.uk/spm/

  Execution failed: /opt/spm12/spm_BIDS_App.m
  Error using spm_BIDS (line 56)
  BIDS dataset description could not be read.
  Error in spm_BIDS (line 56)
  Error in spm (line 1206)
  Error in spm_standalone (line 115)

Would there be a way to increase verbosity of the logs?

gllmflndn commented 7 years ago

The error you get means that there was an issue with the dataset_description.json file: either the JSON parsing failed or one (or both) of the mandatory fields BIDSVersion or Name was missing. If it does not help, could you at least share the dataset_description.json file?

I'm also going to update the app to a more recent version of SPM12 dev.