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bids-apps / aa

BIDS App containing an instance of the Automatic Analysis
http://automaticanalysis.org
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Invalid argument order #3

Closed chrisgorgo closed 6 years ago

chrisgorgo commented 7 years ago

A valid BIDS App takes the following positional arguments

  1. Position 1: input bids directory
  2. Position 2: output directory
  3. Position 3: analysis level

However, aa currently takes:

  1. Position 1: input bids directory
  2. Position 2: XML config file
  3. Position 3: XML config file2
  4. Position 4: output directory
  5. Position 5: analysis level

making it incompatible with the framework. The extra XML files would have to be moved to positions 4 and 5.

tiborauer commented 6 years ago

This commit should solve this issue.

tiborauer commented 6 years ago

I close this one.