Minimal freesurfer image

bids-apps / freesurfer

BIDS app wrapping recon-all from FreeSurfer

Apache License 2.0

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Minimal freesurfer image #65

Open commandercool opened 3 years ago

commandercool commented 3 years ago

Hello together!

Some time ago I've created a minimal freesurfer image that is based on freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0 and is able to run recon-all. It is only 732.6 MB compressed and 1.93GB when pulled.

I've figured you might be interested using it as a base in order to make your image a little smaller.

Here is it: https://hub.docker.com/r/alerokhin/freesurfer6

PeerHerholz commented 3 years ago

Ahoi hoi @commandercool,

thanks so much for the pointer, that sounds fantastic! Did you test any other FreeSurfer functions/pipelines as well? Tagging @Shotgunosine to maybe discuss if we can/should incorporate this somehow!?