gkiar
commented
7 years ago Hi! We currently support 24 parcellations within the container, including many of the popular ones distributed with tools like FSL, but the BIDs app doesn't allow users to specify other parcellations - this is done so that we can ensure the quality of the parcellations used, and users won't accidentally use atlases that are not aligned to the MNI152 space.
If you want to send me your atlas I can test it, ensure it aligns, and integrate it into the pipeline.
Alternatively, if you bypass the entrypoint in this container and run the pipeline directly, without the BIDS directory crawling, I can help you use your own parcellation. This solution is much uglier and more annoying to parallellize, so I suggest the former.
Let me know how you'd like to proceed! Greg
-- Greg Kiar gkiar07@gmail.com
On Thu, Aug 31, 2017 at 8:58 AM, mnarayan notifications@github.com wrote:
I assumed from ndmg documentation that structural connectomes can be created using many pre-defined atlases. However, the README doesn't mention how to specify location of an atlas as an input.
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mnarayan
chrisgorgo
I assumed from ndmg documentation that structural connectomes can be created using many pre-defined atlases. However, the README doesn't mention how to specify location of an atlas as an input.