bids-apps / oppni

runs fast optimization of preprocessing pipelines for BOLD fMRI
Apache License 2.0
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[INFRA] add Github CI to test latest stable version #27

Closed Remi-Gau closed 1 year ago

Remi-Gau commented 1 year ago

latest fails with the following error:

2023-05-19T12:29:53.5919667Z ##[group]Run docker run -t --rm --read-only \
2023-05-19T12:29:53.5919998Z docker run -t --rm --read-only \
2023-05-19T12:29:53.5920280Z   -v ${HOME}/data/ds114_test1:/bids_dataset \
2023-05-19T12:29:53.5920556Z   -v ${HOME}/outputs1:/outputs \
2023-05-19T12:29:53.5920785Z   -v /tmp:/tmp \
2023-05-19T12:29:53.5921011Z   -v /var/tmp:/var/tmp \
2023-05-19T12:29:53.5921252Z     bids/oppni:latest \
2023-05-19T12:29:53.5921508Z       /bids_dataset /outputs participant \
2023-05-19T12:29:53.5921798Z         --participant_label 01
2023-05-19T12:29:53.5978011Z shell: /usr/bin/bash -l {0}
2023-05-19T12:29:53.5978234Z ##[endgroup]
2023-05-19T12:29:56.6186411Z    1: Not all subjects/sessions/runs have the same scanning parameters. (code: 39 - INCONSISTENT_PARAMETERS)
2023-05-19T12:29:56.6191302Z        /sub-02/anat/sub-02_T1w.nii.gz
2023-05-19T12:29:56.6191475Z 
2023-05-19T12:29:56.6222448Z         Summary:                  Available Tasks:        Available Modalities: 
2023-05-19T12:29:56.6228004Z         16 Files, 324.57MB        finger_foot_lips        T1w                   
2023-05-19T12:29:56.6233340Z         2 - Subjects              line_bisection          dwi                   
2023-05-19T12:29:56.6238924Z         1 - Session                                       bold                  
2023-05-19T12:29:56.6242543Z 
2023-05-19T12:29:56.6276964Z 
2023-05-19T12:29:56.6286790Z run_oppni.sh /opt/mcr/v80/ /bids_dataset /outputs participant --participant 01 --run_name linebisection --task_design event
2023-05-19T12:29:56.6319258Z ---
2023-05-19T12:30:00.0983209Z Could not access the MCR component cache.
2023-05-19T12:30:00.1310166Z 
2023-05-19T12:30:00.1310831Z Unexpected error: <type 'exceptions.Exception'>
2023-05-19T12:30:00.1311167Z Traceback (most recent call last):
2023-05-19T12:30:00.1311442Z   File "/oppni/oppni.py", line 222, in <module>
2023-05-19T12:30:00.1311683Z     run_oppni()
2023-05-19T12:30:00.1311955Z   File "/oppni/oppni.py", line 199, in run_oppni
2023-05-19T12:30:00.1312336Z     run_part_one(args.bids_dir, args.participant_label, task_group, args.output_dir, args.analysis_level )
2023-05-19T12:30:00.1312698Z   File "/oppni/oppni.py", line 150, in run_part_one
2023-05-19T12:30:00.1312930Z     run_cmd(cmd)
2023-05-19T12:30:00.1313164Z   File "/oppni/oppni.py", line 67, in run_cmd
2023-05-19T12:30:00.1313467Z     raise Exception("Non zero return code: %d"%process.returncode)
2023-05-19T12:30:00.1313763Z Exception: Non zero return code: 255