Closed Gilles86 closed 4 years ago
Does anyone have some MPM or MT-data to share?
There's this openly available hRMI (MPM) data: https://github.molgen.mpg.de/hMRI-group/Toolbox/wiki/HmriDemoDataset
Bit of a mundane question, but: where should we put these example datasets? Github tends to not work very well with large data files. What is a good alternative?
I think Open Science Framework is a good option.
@Gilles86 happy to share example datasets for the (remaining) methods I listed here. I also created a project on OSF, I can transfer its ownership to you and invite collaborators if everyone is OK to upload here.
@Gilles86 happy to share example datasets for the (remaining) methods I listed here. I also created a project on OSF, I can transfer its ownership to you and invite collaborators if everyone is OK to upload here.
Would be great!
Here's an osf repository that @emdupre created for the tedana
:tada: project: https://osf.io/bpe8h/
Seems like a similar idea for BEP001 examples would be great.
I can contribute a session with MP2RAGE, Sa2RAGE, multi echo GRE (mag, phase)
Assigned to @Gilles86, @tiborauer & @christophephillips to add their data to an osf project.
@agahkarakuzu to give write access to already existing OSF project: https://osf.io/k4bs5. 😸
we currently have a test-retest single subject MPM dataset that can be added as well.
I started pushing some example data to OSF. Here is my checklist for the examples I can collect:
My examples wont be "complete datasets", but would make a decent demonstration as a starting point.
@Gilles86 will bring in examples for
Side note, for ME-MP2RAGE please see the qMRI applications that can be derived from an existing grouping suffix
subsection. I think ME-MP2RAGE
worths being listed there, and other qMRI applications that can use an existing suffix but can create new use cases by alternations to the additional parameters. That table eventually should put things in better context on the relevance between suffixes and various qMRI applications.
@lazaral I saw that you created a new project in OSF for MPM data (https://osf.io/zthwr/). I will soon add all the people on zthwr
to https://osf.io/k4bs5/. We can keep all the examples in one place, would make our life easier. Would you mind uploading your examples dataset to k4bs5
?
Edit:
I've just added you and C. Phillips to the OSF page for BEP001, you have read/write access.
Yes that's a great idea - thank you @agahkarakuzu !
Thanks @agahkarakuzu ! I've been playing with the hMRI toolbox example dataset and will try to push them there, as soon as I've got an 'acceptable BIDSified version' of them. :-)
Let's collect some actual data that we can use as examples for the BEP001.
One candidate already is Chris G's 7T dataset: https://openneuro.org/datasets/ds000113
Wietske van der Zwaag's 3D EPI MP2RAGEs: https://www.sciencedirect.com/science/article/pii/S2352340918308825
I am most likely to also share some ME-MP2RAGE data.