Closed KirstieJane closed 4 years ago
Hi, I might be a bit late for the meeting. Moreover since I'm running behind the clock I haven't sufficiently investigated the MPM data set to provide a nice feedback on how it BIDSifies, if parameters are missing or not matching definitions in BIDS, etc. Sorry about that ! At the latest, I'll do that during the Hackathon in Rome.
Next dev call: Wednesday 29 May at 4pm CEST / 3pm BST / 10am EDT / 7am PDT
All welcome, please see BIDS mailing list for zoom link (or ping @KirstieJane!)
Agenda
The following points are put in place by @KirstieJane after the call on 15 May....they might move around as we develop and discuss the extension πΈ
Document merged changes: @KirstieJane & @agahkarakuzu
There are a few changes that are already merged to
master
but that aren't reflected in the ProposedChangesToSpecification.md file.indexable metadata
merged in PR #37 but issue #26 open until the PCTS doc is updatedMP2RAGE
andMPM
) needs to be added....for example.Update the examples: @lazaral, @tiborauer, @christophephillips & @Gilles86
General driving principle is that for each new concept in the specification we have an example in the text (and maybe as a dataset?)
Empty files correctly named: @lazaral
Issues #34 & #46.
Real data in BIDS format: @tiborauer, @christophephillips & @Gilles86
Issue #11.
List of metadata terms
Do the metadata terms that we have listed contain the information needed to run the processing pipelines? Are there any missing?
Run hmri toolbox on BIDS formatted data: @christophephillips
Specifically, can we run the hmri toolbox on BEP001 formatted data? (And get out BEP001 formatted data!)
Field maps: @agahkarakuzu
Expand definition of field maps in specification. Issue #44.
Symbolic links: @KirstieJane
Need to add to the specification something about being able to symlink derivatives files to raw. See #25
Timeline
It would be GREAT to get a PR open to the main specification before OHBM. Documenting what we have done (and why we have done it) is one of the big steps in getting there.... πͺ Keep up the hard work ποΈ ποΈββοΈ πΎ
We'll plan to meet in person at OHBM in the Open Science Room: https://github.com/ohbm/OpenScienceRoom2019/issues/18