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bids-standard / bids-examples

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
http://bids-standard.github.io/bids-examples/
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HED-SCORE example of EEG and iEEG data with annotations #467

Closed dorahermes closed 1 day ago

dorahermes commented 2 weeks ago

This BIDS example has EEG and iEEG data with annotations from the HED-SCORE library schema. It includes a subject with EEG data where artifacts are annotated, a subject with EEG data where seizures are annotated and a subject with iEEG data during photic stimulation was done and this is annotated as a modulator. Examples are provided of artifacts or seizures only observed in certain channels using the channel column in the _events.tsv file.

This example uses the recently released HED-SCORE version 2.0.0 and replaces pull request #324 .

It passes the BIDS online validator, comment welcome!

@VisLab @christinerogers

christinerogers commented 1 day ago

Hi @dorahermes I'm noticing bids-validator errors in the checks. Is this something expected / unexpected / easily solvable?

effigies commented 1 day ago

@christinerogers https://github.com/bids-standard/bids-validator/issues/2124

dorahermes commented 1 day ago

Thank you so much for checking! I am not sure I can reproduce the error, as I did not get any errors using the online validator, except for the fact that the .edf files are empty, which I believe is required for the BIDS examples.

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christinerogers commented 1 day ago

Reporting back from the Maintainers meeting -- A fix is on the way from the maintainers group since this is impacting lots of datasets, but in the meantime per @effigies :
Since this is passing on a few branches includingmaster-deno and 'master' this should be good to merge.
I can approve on that basis @dorahermes