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bids-standard / bids-specification

Brain Imaging Data Structure (BIDS) Specification
https://bids-specification.readthedocs.io/
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[Pre-BEP] Computational Model Description #230

Open effigies opened 5 years ago

effigies commented 5 years ago

This issue is intended to host discussions on the Computational Model description specification, which is intended to become a BEP over the next few months.

If you would like to participate in this discussion, you can reply or subscribe to this issue on the right.

When working documents become available, they will be linked in this top post.

pgleeson commented 5 years ago

Just adding a link to the quick & dirty code implemented for this at Princeton: https://github.com/NeuroML/NeuroMLlite/commit/b171b91693c74dd48cfbfbc21d4ab9ebdaa67b99#diff-27e92ab9bacc4d0a6fc97ba5fe1c1187

poldrack commented 5 years ago

Commentary on the Lee et al. paper is now posted as preprint: https://psyarxiv.com/q3rnx/

pausz commented 5 years ago

@poldrack Interested in getting involved. This issue has been on my to-do list for a long time now and was really glad when someone mentioned the preprint at the ReproNim training workshop.

@stewart-heitmann: you may like to participate of this initiative.

stewart-heitmann commented 5 years ago

Thanks for the heads-up @pausz. I am not familar with NeuroML specifically but I am familiar with neural modelling in general.

pgleeson commented 5 years ago

Hi @stewart-heitmann, I was also not very familiar with the Brain Dynamics Toolbox. I'll install and try it out, as we're hoping to be able to interact more with the types of models it covers: https://github.com/NeuralEnsemble/Networks_SIG/issues/4

PeerHerholz commented 5 years ago

Assuming that the following are not considered working documents, here are resources generated during the BIDS-computational Models meeting (provided by @effigies):

  1. Summary document: https://docs.google.com/document/d/1hoLFzQYw-VqU5nuDjVz7NEOgJUGa4zmX1mA67CjM-UA

  2. Some provisional BEP text (more notes from the meeting than a specific proposal): https://docs.google.com/document/d/1oaBWmkrUqH28oQb1PTO-rG_kuwNX9KqAoE9i5iDh1xw

sappelhoff commented 2 years ago

Related: This BEP on computational models: #967