What type of data should be listed in the Dataset Examples?

bids-standard / bids-starter-kit

The Starter-kit has moved to the new BIDS website.

https://bids-website.readthedocs.io/en/latest/getting_started/

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What type of data should be listed in the Dataset Examples? #90

Closed dorahermes closed 3 years ago

dorahermes commented 6 years ago

I was just wondering what the type of data should go in Dataset Examples: should Raw (Non-BIDS) data be in there? The term raw is a bit confusing since BIDS is meant for raw data.

@Park-Patrick @KirstieJane

emdupre commented 6 years ago

Non-BIDS data could go in a source data folder, maybe ?

chrisgorgo commented 6 years ago

The folder in the spec for non-harmonized data is sourcedata/

emdupre commented 6 years ago

Yes, sorry, I mis-typed. Was that what you were referring to, though, @dorahermes ?

dorahermes commented 6 years ago

Thank you! Yes, that is what I meant.

In that case, is the following source data?

Brainhack Western 2018 source dataset: ds001 for this BIDS compliant dataset:
Brainhack Western 2018 dataset: ds001_BIDS

And what are these?

Datasets used in Stanford Reproducibility Center tutorials: NKI Rockland
Resting state fMRI datasets: FCON 1000 Are we intending to list open source neuroscience datasets? Then there is a long way to go... If we stick to BIDS compliant (and its sourcedata) it remains manageable and more relevant to the starters kit.

@emdupre @KirstieJane

KirstieJane commented 6 years ago

You're talking about this page in the wiki, right @dorahermes? https://github.com/INCF/BIDS-Starter-Kit/wiki/dataset-examples

You're right that that page is incomplete at the moment.

My vision for sharing source data and BIDS data together is that they can be used to build tutorials on how to convert from sourcedata to bids data.

I don't think the goal is to list all the BIDS compliant datasets at that page (better to include instructions on how to find them) but to add in more details about how the source data were converted.

I think I'd find example conversations (as though they were done by hand) from a bunch of different sourcedata examples really valuable to get started with BIDS. (Some of the converters are a little "black magic-y" which is why converting by hand is so important the first time!)

dorahermes commented 6 years ago

Thank you! All sounds good, I updated this page to clarify. For now, I did not remove the links to non-BIDS data in there, but I think a focus on sourcedata --> BIDS is good!

KirstieJane commented 6 years ago

Brill! Thank you!

I’m on my phone now so leave this issue open and I’ll have a quick read through this afternoon and close if it all looks good :sparkles:

Remi-Gau commented 3 years ago

Closing this because it is a tad* obsolote.

understatement