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bids-standard / bids-validator

Validator for the Brain Imaging Data Structure
https://bids-standard.github.io/bids-validator/
MIT License
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Warning for samples.tsv column names already defined in the standard. #1926

Open achilleasNP opened 7 months ago

achilleasNP commented 7 months ago

Hi,

I get the warning below while all three columns mentioned are a required part of the standard. I get the warning, even when I use the v1.7.0 schema (using the -s v1.7.0) that includes the definition of those columns. 

  2: [WARN] Tabular file contains custom columns not described in a data dictionary (code: 82 - CUSTOM_COLUMN_WITHOUT_DESCRIPTION) 
    ./samples.tsv           
       Evidence: Columns: sample_id, participant_id, sample_type not defined, please define in: /samples.json

I am using version 1.14.4 of the validator.

Thanks in advance, Achilleas

effigies commented 4 months ago

The attempt to incorporate schema validation into the legacy validator failed. Please test the schema validator using the instructions in

https://github.com/bids-standard/bids-validator/blob/master/bids-validator/src/README.md