I had a some bit of trouble with figuring out the appropriate paths that would be available to the Singularity container. Do you think that adding a bit more text after the example to explain that, when running the Singularity container version, the paths to the data and the output need to be determined specifically for the cluster being used, but that using paths from /home/ are a good bet?
As you note, different folders will be accessible in different places, and I got confused about which to use.
I can write some text and submit via PR if this seems a good idea.
I had a some bit of trouble with figuring out the appropriate paths that would be available to the Singularity container. Do you think that adding a bit more text after the example to explain that, when running the Singularity container version, the paths to the data and the output need to be determined specifically for the cluster being used, but that using paths from /home/ are a good bet?
As you note, different folders will be accessible in different places, and I got confused about which to use.
I can write some text and submit via PR if this seems a good idea.
From https://github.com/bids-apps/bids-apps.github.io/issues/1