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bids-standard / bids2nda

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.
Apache License 2.0
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Image Orientation Issue #39

Open ucigrangers opened 1 year ago

ucigrangers commented 1 year ago

Hi there, I am using the tool and having an issue with what looks like an inability to read in the image orientation. Is this error recognizable by anyone or due to potential lack on information in our dcm header? Thanks so much in advance, any help here would be greatly appreciated!

Best, Steve G.

Traceback (most recent call last): File "/home/eaolson/.local/bin/bids2nda", line 8, in sys.exit(main()) File "/home/eaolson/.local/lib/python3.9/site-packages/bids2nda/main.py", line 421, in main run(args) File "/home/eaolson/.local/lib/python3.9/site-packages/bids2nda/main.py", line 234, in run dict_append(image03_dict, 'image_orientation', cosine_to_orientation(iop) if iop else '') File "/home/eaolson/.local/lib/python3.9/site-packages/bids2nda/main.py", line 121, in cosine_to_orientation raise RuntimeError( RuntimeError: Could not deduce the image orientation of [-0.0565043, 0.861655, 0.504339, 0.00942049, 0.505583, -0.862726]. 'plane' value is array([2., 0., 0.])

ninakougan commented 2 months ago

@ucigrangers

Hi Steve, Did you ever figure out how to resolve this error?