Options change

[nicholst]

Revised BIDSto3col.sh to work without options when trial_type is missing. I did this because trial_type is not mandatory (and simply doesn't make sense for some experiments), and the script should work gracefully (i.e. optionless) when no trial_type column is present.

Changes comprise:

• If trial_type is missing, all rows are processed. Output file is just OutBase (nothing appended).
• -s option no longer takes an event type name... if you're specifying a single event, just set OutBase accordingly.
• -e option to select a single event type is left as is, but...
• Added -E option to select a single event type without appending event name to OutBase.

@AlexBowring, this will affect your usage... is this all OK?

@AlexBowring, @cmaumet - It seems like having both -e and -E option is overkill. Should I just have one (e.g. -e) that behaves like -s (i.e. doesn't append the event name to OutBase)?

[cmaumet]

@nicholst: +1 to have only -e with a behaviour similar to -s.

[nicholst]

I'm going to merge this now, with @cmaumet's suggestion implemented.

@alexbowring & @wanderine, take care because your command line may need to change.