Closed jpfeuffer closed 2 years ago
Parsing SF_200217_pPeptideLibrary_pool2_HCDOT_rep2_consensus_fdr_filter_pep_luciphor.idXML... ╭──────────────── Oops! The 'quantms' MultiQC module broke... ─────────────────╮ │ Please copy this log and report it at │ │ https://github.com/ewels/MultiQC/issues │ │ Please attach a file that triggers the error. The last file found was: │ │ ./proteomicslfq/out.mzTab │ │ │ │ Traceback (most recent call last): │ │ File "/opt/conda/envs/nf-core-proteomicslfq-1.1.0dev/lib/python3.9/site-pa │ │ output = mod() │ │ File "/opt/conda/envs/nf-core-proteomicslfq-1.1.0dev/lib/python3.9/site-pa │ │ self.parse_mzml_idx() │ │ File "/opt/conda/envs/nf-core-proteomicslfq-1.1.0dev/lib/python3.9/site-pa │ │ mzml_table[mzML_name]['Final result of spectra'] = self.mL_spec_ident_fi │ │ UnboundLocalError: local variable 'mzML_name' referenced before assignment │ │ │ ╰──────────────────────────────────────────────────────────────────────────────╯ | multiqc | No analysis results found. Cleaning up.. | multiqc | MultiQC complete
Do you have any idea?
https://github.com/nf-core/proteomicslfq/runs/5233980357?check_suite_focus=true
@daichengxin this issue has been solved?
Yes. We are using it in CI
Do you have any idea?
https://github.com/nf-core/proteomicslfq/runs/5233980357?check_suite_focus=true