bigbio / pmultiqc

A library for QC report based on MultiQC framework
GNU General Public License v3.0
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Error analyzing proteomicslfq test data #35

Closed jpfeuffer closed 2 years ago

jpfeuffer commented 2 years ago
 Parsing SF_200217_pPeptideLibrary_pool2_HCDOT_rep2_consensus_fdr_filter_pep_luciphor.idXML...
  ╭──────────────── Oops! The 'quantms' MultiQC module broke... ─────────────────╮
  │ Please copy this log and report it at                                        │
  │ https://github.com/ewels/MultiQC/issues                                      │
  │ Please attach a file that triggers the error. The last file found was:       │
  │ ./proteomicslfq/out.mzTab                                                    │
  │                                                                              │
  │ Traceback (most recent call last):                                           │
  │   File "/opt/conda/envs/nf-core-proteomicslfq-1.1.0dev/lib/python3.9/site-pa │
  │     output = mod()                                                           │
  │   File "/opt/conda/envs/nf-core-proteomicslfq-1.1.0dev/lib/python3.9/site-pa │
  │     self.parse_mzml_idx()                                                    │
  │   File "/opt/conda/envs/nf-core-proteomicslfq-1.1.0dev/lib/python3.9/site-pa │
  │     mzml_table[mzML_name]['Final result of spectra'] = self.mL_spec_ident_fi │
  │ UnboundLocalError: local variable 'mzML_name' referenced before assignment   │
  │                                                                              │
  ╰──────────────────────────────────────────────────────────────────────────────╯
  |           multiqc | No analysis results found. Cleaning up..
  |           multiqc | MultiQC complete

Do you have any idea?

https://github.com/nf-core/proteomicslfq/runs/5233980357?check_suite_focus=true

ypriverol commented 2 years ago

@daichengxin this issue has been solved?

jpfeuffer commented 2 years ago

Yes. We are using it in CI