daichengxin
commented
2 years ago Pep table: The intensity of peptide is calculated in different conditions. The average intensity across conditions is then calculated. Finally the bar show the all the intensity values above and below the average intensity for all the fractions, runs and peptiforms.
Protein table: The bar show the all the intensity values above and below the average intensity for all the runs. But the bar show in sample-level might make more sense
ok. I will add NA to the plots.
Can you describe what we see on the columns of the peptide and protein table? I want to understand what is exactly plotted.
Can we add zero or NA to the bar plots when a peptide was missing in a sample? Otherwise you sometimes have 1 bar or two bars or three bars..