Create / Download Canonical protein fasta file from ENSEMBL

bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit

Apache License 2.0

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Closed ypriverol closed 4 years ago

ypriverol commented 5 years ago

[ ] Input: (specific taxonomy - species - to be download) or all the species from ENSEMBL. A folder where the files will be download.
[ ] Output: The canonical FASTA file for the specific taxonomy (species)

ypriverol commented 5 years ago

We should be able to download cds for ensembl ftp://ftp.ensembl.org/pub/release-96/fasta/homo_sapiens/cds/

ypriverol commented 5 years ago

The tool will need to download in addition ncRNA

ypriverol commented 5 years ago

The current version contains downloads for cds and ncRNAs as agreed.

husensofteng commented 5 years ago

and vcfs

husensofteng commented 4 years ago

done