Create a Nextflow workflow to create custom databases - Githubissues

bigbio / py-pgatk

Python tools for proteogenomics analysis toolkit

Apache License 2.0

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Create a Nextflow workflow to create custom databases #14

Closed ypriverol closed 3 years ago

ypriverol commented 5 years ago

We would like to have a nextflow workflow the parameters will define which custom database will be added:

Parameters:

[x] Taxonomy (mandatory)
[x] Include (lncRNA, sncRNA, ..): We basically need to expose in the workflow the parameter --include_biotypes
[x] Include cancer mutations.
[x] Tissue (This can be used in combination with the previous parameter).